Thanks guys for the help, just got out from under the car and i think i have seen the problem.
I have a stall converter on the C6 , don' t know who made it, any way i can see the converter mounting studs are not standing perpendicular , they look like the stud is coming through the plate at an angle. They are probably distorting the flex plate. So out comes the trans again but this time i will remove the rhs header after i jack the engine up and remove the rh engine mount and brackets and drop the drag link and idler arm. Then unbolt the trans on a jack and twist trans to the right and let it down. Sounds easy, but a right PITA. so over all this shit.
If the experts at the trans shop did not screw up the front pump seal i would not have to deal with this. I did my apprenticeship in a Ford dealership and i used to do all of the auto trans.
Sorry about the rant but i am really pissed at the moment and ford power train headers are looking good and i am old cranky man lol